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library(spacexr) library(Matrix) # 1. Load the single-cell reference matrix my_reference <- Reference(counts = sc_counts, cell_types = sc_annotations) # 2. Load the spatial coordinate data spatial_counts <- read.table("spatial_counts.csv") coords <- read.table("spatial_coordinates.csv") puck <- SpatialRNA(coords, spatial_counts) # 3. Execute the full cell-type decomposition model my_RCTD <- create.RCTD(puck, my_reference, max_cores = 4) my_RCTD <- run.RCTD(my_RCTD, mode = 'full') Use code with caution. Context 2: CAD Automation and AutoLISP Scripting (RCTD 444)